B Rotunda

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Kaur, Sarinder, 2026, "B Rotunda", https://doi.org/10.22452/RD/KVOL0C, Universiti Malaya Research Data Repository, V1, UNF:6:AL5IYP22lqkJXV275/506g== [fileUNF]
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Description
Boesenbergia rotunda (L.) Mansf., commonly known as fingerroot ginger, is an important ethno-medicinal plant of South East Asia, from which key pharmacologically active metabolites have been shown to have anti-viral and anti-tumor activity, including inhibition of HIV, Dengue virus and SARS-CoV-2. This project involved genome analysis of B. rotunda together with a complete genome sequence as a hybrid assembly. Deep transcriptome data from several different cell types and DNA methylation data from the same samples were collected with the aim to provide resources for functional analysis of this important medicinal plant. (2026-02-24)
Subject Agricultural Sciences
Notes Taheri, S., Teo, C. H., Heslop-Harrison, J. S., Schwarzacher, T., Tan, Y. S., Wee, W. Y., Khalid, N., Biswas, M. K., Mutha, N. V. R., Mohd-Yusuf, Y., Gan, H. M., & Harikrishna, J. A. (2022). Genome Assembly and Analysis of the Flavonoid and Phenylpropanoid Biosynthetic Pathways in Fingerroot Ginger (Boesenbergia rotunda). International Journal of Molecular Sciences, 23(13), 7269. https://doi.org/10.3390/ijms23137269
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annotation.tab
Tabular Data - 23.4 MB
Published Mar 10, 2026
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6 Variables, 73102 Observations UNF:6:0JAa6kKxaX5S+TfzPY9lqQ==
Annotation
B_sequence.csv
Comma Separated Values - 32.7 MB
Published Mar 10, 2026
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MD5: 91cecbb908bdf13eafaf0cf6cb27195b
Sequence
coding.tab
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Published Mar 10, 2026
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7 Variables, 416995 Observations UNF:6:PrPgPRkNSoeCP8xYInvfJg==
Coding
contig.tab
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Published Mar 10, 2026
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1 Variables, 8858 Observations UNF:6:25HmqZxe+0s9//1M/WeLaw==
Contig
ginger.pep.fa.blast.cog.tab
Tabular Data - 9.0 MB
Published Mar 10, 2026
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14 Variables, 107071 Observations UNF:6:0kGAoDFhQE4n4VBeKVWYgw==
fasta COG
ginger.pep.fa.blast.kegg.tab
Tabular Data - 45.8 MB
Published Mar 10, 2026
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14 Variables, 271334 Observations UNF:6:U06hOhwGlgLKyhrXj/x15g==
Blast KEGG
ginger.pep.fa.blast.swissprot.tab
Tabular Data - 43.2 MB
Published Mar 10, 2026
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14 Variables, 257140 Observations UNF:6:Lv1lciMhucD3zLi/1q32Ig==
SWISSPROT
ginger.pep.fa.blast.trembl.tab
Tabular Data - 55.4 MB
Published Mar 10, 2026
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14 Variables, 352971 Observations UNF:6:qOHTPCzFmTcKBeHj/YoluA==
BLAST TREMBL
ginger.pep.fa.iprscan.tab
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Published Mar 10, 2026
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8 Variables, 517523 Observations UNF:6:P+qQhE7gsao1bpYhcj7GXg==
IPRSCAN
mirna.tab
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Published Mar 10, 2026
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8 Variables, 213 Observations UNF:6:BUM0sapL+ikWDFsdqTaqnw==
MiRNA
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